Source | |
Name: | European Bioinformatics Institute |
pubmed | 14681455 |
psi-mi | MI:0469 |
postalAddress | Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, United Kingdom |
url | http://www.ebi.ac.uk |
ExperimentList | |||||||||
Experiment #2 | |||||||||
Name: | ishibashi-2006-1 | ||||||||
Description: | A Higher Plant Has Three Different Types of RPA Heterotrimeric Complex. | ||||||||
pubmed | 16428324 | ||||||||
Interaction detection method: |
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Participant identification method: |
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author-list | Ishibashi T., Kimura S., Sakaguchi K. | ||||||||
contact-email | kengo@rs.noda.tus.ac.jp | ||||||||
exp-modification | Directed yeast two hybrid | ||||||||
figure-legend | Figure 2 (A). | ||||||||
Experiment #27 | |||||||||
Name: | ishibashi-2006-3 | ||||||||
Description: | A Higher Plant Has Three Different Types of RPA Heterotrimeric Complex. | ||||||||
pubmed | 16428324 | ||||||||
Interaction detection method: |
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Participant identification method: |
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author-list | Ishibashi T., Kimura S., Sakaguchi K. | ||||||||
contact-email | kengo@rs.noda.tus.ac.jp | ||||||||
figure-legend | Figure 2 (D)and (E). | ||||||||
Experiment #46 | |||||||||
Name: | ishibashi-2006-2 | ||||||||
Description: | A Higher Plant Has Three Different Types of RPA Heterotrimeric Complex. | ||||||||
pubmed | 16428324 | ||||||||
Interaction detection method: |
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Participant identification method: |
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author-list | Ishibashi T., Kimura S., Sakaguchi K. | ||||||||
contact-email | kengo@rs.noda.tus.ac.jp | ||||||||
figure-legend | Figure 2 (B)and (C). |
InteractorList | |
Interactor #4 | |
Name: | q9sdk9_orysa :Hypothetical protein P0705D01.4 (gene name: P0705D01.4) (gene name synonym: OsRPA14) |
uniprotkb (TrEMBL_31) | Q9SDK9 (q9sdk9_orysa) |
go | GO:0003676 (F:nucleic acid binding) |
go | GO:0006412 (P:protein biosynthesis) |
interpro | IPR012340 (OB_NA_bd_sub) |
intact | EBI-849521 (q9sdk9_orysa) |
Name: | protein |
psi-mi | MI:0326 |
pubmed | 14755292 |
so | SO:0000358 | Organism: |
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Sequence: | MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQ STDGHQLTIKGASGAPMSHYVEIIGIAEPNQAIRAEVCTD FGENFDPAPFNGLCKLANGQMKDLFL |
Interactor #6 | |
Name: | q9avm2_orysa :Replication protein A 30kDa (gene name: OsRPA32) |
uniprotkb (TrEMBL_26) | Q9AVM2 (q9avm2_orysa) |
go | GO:0003676 (F:nucleic acid binding) |
interpro | IPR012340 (OB_NA_bd_sub) |
interpro | IPR004365 (OB_tRNA_NA_bd) |
interpro | IPR011991 (Wing_hlx_DNA_bd) |
intact | EBI-849513 (q9avm2_orysa) |
Name: | protein |
psi-mi | MI:0326 |
pubmed | 14755292 |
so | SO:0000358 | Organism: |
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Sequence: | MMSFSQPDAFSPSQFTSSQNAAADSTTPSKSRGASSTMPL TVKQISEAQQSGITGEKGAPFVVDGVETANVRLVGLVSGK TERNTDVSFMIDDGTGRLDFIRWVNDGADSAETAAVQNGM YVSVIGSLKGLQERKRATAFAIRPVTDYNEVTLHFIQCVR MHLENTKSQIGSPAKTYSAMGSSSSNGFSEMTTPTSVKSN PAPVLSVTNGSKTDLNTEVLNVFREPANVESEHGVHIDEI VKRLRLPEAKIKVAIDYLADIGHIYSTIDESHYKSAFNE |
Interactor #10 | |
Name: | q6h7j5_orysa :Putative replication protein A2 (gene name: OJ1643_A10.19) |
uniprotkb (TrEMBL_27) | Q6H7J5 (q6h7j5_orysa) |
go | GO:0003676 (F:nucleic acid binding) |
interpro | IPR012340 (OB_NA_bd_sub) |
interpro | IPR004365 (OB_tRNA_NA_bd) |
interpro | IPR011991 (Wing_hlx_DNA_bd) |
intact | EBI-849532 (q6h7j5_orysa) |
Name: | protein |
psi-mi | MI:0326 |
pubmed | 14755292 |
so | SO:0000358 | Organism: |
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Sequence: | MYGVGVGGGGGGNYDGGGGNASSLFGGGGFMPSQATNAAE GTSGGGGGFPKSRNAQALLPLTVKQIMDASQTNDDKSNFA VNGMEVSTVRLVGRMLNKLDRVTDVSFTLDDGTGRVPVNR WENDSTDTKEMADIQNGDYVIVNGGLKGFQGKRQVVAYSV RRITNFNDVTHHFLHCVHVHLELTRPKSQVNANTATGTPN QTMPRDSMAYNQSPLTNQASTFSAPQNTGTGTNMIDLVLN VFHDPAVMNDDHGVGVDYVSRRLNLPEETVGKIIIDQVDL GHLYATIDDHHYKSTMNG |
Interactor #13 | |
Name: | q5z8l1_orysa :Putative replication protein A2 (gene name: P0550B04.15) |
uniprotkb (TrEMBL_28) | Q5Z8L1 (q5z8l1_orysa) |
go | GO:0003676 (F:nucleic acid binding) |
interpro | IPR012340 (OB_NA_bd_sub) |
interpro | IPR004365 (OB_tRNA_NA_bd) |
intact | EBI-849544 (q5z8l1_orysa) |
Name: | protein |
psi-mi | MI:0326 |
pubmed | 14755292 |
so | SO:0000358 | Organism: |
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Sequence: | MAAAASYFSGTALMPSQRSGAPAPEYSAAGTGAAAAPSPS KPRDPRFSGCVPATVLHISRSFAAALAADGGGDPVFSIDG VETTNVRVLGRVVSVVSRDTDVCFTLDDSTGKIPLVRWIT DQSDTRDTSYIQEGVYVKVQVNLMGFQAKKQGLARSIRPI NNFNEVVLHFIECMHVHLESVQSKMQRQLPPSVQTNEYTH VPSSGGVRDYQVHFTPQVNQGLPPAVQTNTSTYVPLLGGV RDHQAHFAQVNQGQFSPAVQANTSTHLPFSGGVGEHQIHF TPKVNQGQFPPSVQTNTSAHVPYSGGFREHQVHFTPPVNQ GQFPPAVQTNLYNHAASSGGVREQVHLTQANQFSAYSSTG GLQHDPQRMVLEALQQPDILLSNMEHTLMNWLEELECPKQ TLWGLSSIWLQQASSIGPLMTIMSSLCVMVDQCNHPQD |
Interactor #17 | |
Name: | q65xv7_orysa :Hypothetical protein P0016H04.11 (gene name: P0016H04.11) |
uniprotkb (TrEMBL_28) | Q65XV7 (q65xv7_orysa) |
go | GO:0005634 (C:nucleus) |
go | GO:0003677 (F:DNA binding) |
go | GO:0006260 (P:DNA replication) |
interpro | IPR012340 (OB_NA_bd_sub) |
interpro | IPR004365 (OB_tRNA_NA_bd) |
interpro | IPR006162 (Ppantne_S) |
interpro | IPR007199 (Rep-A_N) |
interpro | IPR004591 (Rpa1) |
interpro | IPR001878 (Znf_CCHC) |
intact | EBI-849558 (q65xv7_orysa) |
Name: | protein |
psi-mi | MI:0326 |
pubmed | 14755292 |
so | SO:0000358 | Organism: |
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Sequence: | MEPQLTPGAVQAIAEHPDGTGTIQPVLQVVDVRPVTTKNA PPTPKPAERFRMMLSDGVNTQQSMLATALNPLVKDATLRP GTVVQLTDFMCNTIQGKRIIIVVKLDVLQNDCIVIGNPKH YEPKSLTKEQDPNLQASVAQTNNGTYSGGASMLGPSVAPR AEQAASNSSYGGPYNSAQGMLGSSIGRTVEPGPANVSAVG SYGAISAQNTTNANMMQPTSQLNIMNANTMQPTSQLNTMN ANTMQPTSQLSSLNPNQNQRFAAPASGGVFGPPGNAYGQP SRPSYQQPPPVYMNRGPASRNDSATRIIPITALNPYQPKW TIKARVTAKSDIRHWSNARSSGTVFSFDLLDAQGGEIRAQ CWKESADKFFGQIEVGRVYLISRGSLKPAQKKYNTLNHDY EITLDIGLSTVEVCSDDDNSIPRLQYNFRQISELENMANE TIVDLLGVVTSVSPSATIMRKIGTETRKRSIQLKDLSGRS IEVTLWGNFCDAEGQQLQLQCDSGSNPIIAFKGARVGDFN GKSVSTIGSTQLIINPDFPEVERLRQWYMTEGKTAPCISL SREMLNMGRTDARKTIAQIKDENLGRLEKPDWITVKAAIS HVTTESFCYPACPKLLPVGRQCNKKAINNGDGMWHCDRCD ESFQNPEYRYMLRFQIQDHTGSTYASAFDEAGEQIFGRKA GELFSIRNVDQDDAQFAEIIEGVRWHLYLFKLKVKEETYN DEQSLKCTAVKVEKLDPSKESNVLLGAIDNLLLDPKGQSD LAPNAGFTDPVGGHGAPTSSNAYAMNTGGVNQFGQQASIS AGMSTPLAATRNLQTCSICGANGHSAQICHVGADMDMQET SAGGSSMGNYNSIAGNGSSECYKCKQPGHYARDCPGQSTG GLECFKCKQPGHFSRDCPVQSTGGSECFKCKQPGHFARDC PGQSTGAQHQTYGNNVAASRGYNRQSFVGGY |
Interactor #25 | |
Name: | q9avl8_orysa :Replication protein A 70kDa (gene name: OsRPA70a) |
uniprotkb (TrEMBL_25) | Q9AVL8 (q9avl8_orysa) |
go | GO:0005634 (C:nucleus) |
go | GO:0003677 (F:DNA binding) |
go | GO:0006260 (P:DNA replication) |
interpro | IPR012340 (OB_NA_bd_sub) |
interpro | IPR004365 (OB_tRNA_NA_bd) |
interpro | IPR007199 (Rep-A_N) |
interpro | IPR004591 (Rpa1) |
intact | EBI-849583 (q9avl8_orysa) |
Name: | protein |
psi-mi | MI:0326 |
pubmed | 14755292 |
so | SO:0000358 | Organism: |
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Sequence: | MARLTPNGVAAALAGDTNLKPVLQIVELRGVQVNGAGVTR GERFRAVVSDGTAASSALFAAQLSDHARSGALRRGSIVQL SEYVINEVGPRRIIVILNLEVLVSECEIIGNPTALSETGS PIPNPTRVEQFNGAPQYGLMAGNSSNTTTKPSDNVPLFQN SMAGNSSNFATRPSDKVPVFQPTVQPSYRPAPNYKNHGAI MKNEAPARIIPISALNPYQGRWAIKARVTAKGDIRRYHNA KGDGKVFSFDLLDSDGGEIRVTCFNALLDRFYEVVEVGKV YVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLCPDENS SIPTQRFDFRPINEIEDAQNNAILDIIGVVTSVNPCTTIQ RKNGMETQKRTMNLKDMSGRSVEVTMWGDFCNREGSQLQG MVERGIFPVLAVKAGKVSDFSGKSVGTISSTQFFINPDSA EAHSLRQWFDSGGRDAFTQSISRDITPGASRNEIRKTVAQ IKDEGLGMGDKPDWITVKATVIFFKNESFFYTACPNMIGD RQCNKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDH SGTAWVTAFQEAGQELLGCSATELNALKEREDPRFADTML NCLFQEYLLRLKVKEESYGDERKVKNTAVKVEKVDPSGES KFLLDLISKSSALH |
InteractionList | |||||||||||||||||||
Interaction #1 | |||||||||||||||||||
Name: | q9avm2-p0705d01_4 :Directed yeast two hybrid analysis reveals interaction between the OsRPA32 protein and P0705D01.4 protein | ||||||||||||||||||
intact | EBI-849529 (q9avm2-p0705d01_4) | ||||||||||||||||||
Experiments: | 2 | ||||||||||||||||||
Participant #3 |
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Participant #5 |
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Interaction Type: |
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kd | 1.0 | ||||||||||||||||||
Interaction #7 | |||||||||||||||||||
Name: | q6h7j5-p0705d01_4-1 :Directed yeast two hybrid analysis reveals interaction between the Q6H7J5 protein and P0705D01.4 protein | ||||||||||||||||||
intact | EBI-849540 (q6h7j5-p0705d01_4-1) | ||||||||||||||||||
Experiments: | 2 | ||||||||||||||||||
Participant #8 |
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Participant #9 |
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Interaction Type: |
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kd | 1.0 | ||||||||||||||||||
Interaction #11 | |||||||||||||||||||
Name: | q5z8l1-p0705d01_4-2 :Directed yeast two hybrid analysis reveals interaction between the q5z8l1 protein and P0705D01.4 protein | ||||||||||||||||||
intact | EBI-849551 (q5z8l1-p0705d01_4-2) | ||||||||||||||||||
Experiments: | 2 | ||||||||||||||||||
Participant #12 |
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Participant #14 |
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Interaction Type: |
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kd | 1.0 | ||||||||||||||||||
Interaction #15 | |||||||||||||||||||
Name: | q5z8l1-q65xv7 :Directed yeast two hybrid analysis reveals interaction between the q5z8l1 protein and Q65XV7 protein | ||||||||||||||||||
intact | EBI-849572 (q5z8l1-q65xv7) | ||||||||||||||||||
Experiments: | 2 | ||||||||||||||||||
Participant #16 |
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Participant #18 |
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Interaction Type: |
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comment | Very weak interactions between OsRAP32-3 and OsRAP70a and OsRAP70b were detected. | ||||||||||||||||||
kd | 1.0 | ||||||||||||||||||
Interaction #19 | |||||||||||||||||||
Name: | q9avm2-q7y069 :Directed yeast two hybrid analysis reveals interaction between the OsRPA32 protein and Q7Y069 protein | ||||||||||||||||||
intact | EBI-849579 (q9avm2-q7y069) | ||||||||||||||||||
Experiments: | 2 | ||||||||||||||||||
Participant #20 |
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Participant #21 |
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Interaction Type: |
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comment | Weak interactions between OsRAP32-1 and OsRAP70b or OsRAP70c were detected. | ||||||||||||||||||
kd | 1.0 | ||||||||||||||||||
Interaction #22 | |||||||||||||||||||
Name: | q6h7j5-q9avl8 :Directed yeast two hybrid analysis reveals interaction between the Q6H7J5 protein and Q9AVl8 protein | ||||||||||||||||||
intact | EBI-849594 (q6h7j5-q9avl8) | ||||||||||||||||||
Experiments: | 2 | ||||||||||||||||||
Participant #23 |
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Participant #24 |
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Interaction Type: |
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comment | Weak interactions between Q6H7J5 and Q7Y069 or Q65XV7. | ||||||||||||||||||
kd | 1.0 | ||||||||||||||||||
Interaction #26 | |||||||||||||||||||
Name: | q9avm2-p0705d01_4-1 :Co-immunoprecipitation analysis reveals interaction between the OsRPA32 protein and P0705D01.4 protein | ||||||||||||||||||
intact | EBI-849666 (q9avm2-p0705d01_4-1) | ||||||||||||||||||
Experiments: | 27 | ||||||||||||||||||
Participant #28 |
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Participant #29 |
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Interaction Type: |
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kd | 1.0 | ||||||||||||||||||
Interaction #30 | |||||||||||||||||||
Name: | q6h7j5-p0705d01_4-2 :Co-immunoprecipitation analysis reveals interaction between the Q6H7J5 protein and P0705D01.4 protein | ||||||||||||||||||
intact | EBI-849669 (q6h7j5-p0705d01_4-2) | ||||||||||||||||||
Experiments: | 27 | ||||||||||||||||||
Participant #31 |
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Participant #32 |
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Interaction Type: |
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kd | 1.0 | ||||||||||||||||||
Interaction #33 | |||||||||||||||||||
Name: | q5z8l1-p0705d01_4-3 :Co-immunoprecipitation analysis reveals interaction between the q5z8l1 protein and P0705D01.4 protein | ||||||||||||||||||
intact | EBI-849672 (q5z8l1-p0705d01_4-3) | ||||||||||||||||||
Experiments: | 27 | ||||||||||||||||||
Participant #34 |
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Participant #35 |
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Interaction Type: |
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kd | 1.0 | ||||||||||||||||||
Interaction #36 | |||||||||||||||||||
Name: | q6h7j5-q9avl8-2 :Co-immunoprecipitation analysis reveals interaction between the Q6H7J5 protein and Q9AVl8 protein | ||||||||||||||||||
intact | EBI-849675 (q6h7j5-q9avl8-2) | ||||||||||||||||||
Experiments: | 27 | ||||||||||||||||||
Participant #37 |
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Participant #38 |
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Interaction Type: |
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kd | 1.0 | ||||||||||||||||||
Interaction #39 | |||||||||||||||||||
Name: | q9avm2-q7y069-2 :Co-immunoprecipitation analysis reveals interaction between the OsRPA32 protein and Q7Y069 protein | ||||||||||||||||||
intact | EBI-849678 (q9avm2-q7y069-2) | ||||||||||||||||||
Experiments: | 27 | ||||||||||||||||||
Participant #40 |
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Participant #41 |
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Interaction Type: |
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kd | 1.0 | ||||||||||||||||||
Interaction #42 | |||||||||||||||||||
Name: | q5z8l1-q65xv7-2 :Co-immunoprecipitation analysis reveals interaction between the q5z8l1 protein and Q65XV7 protein | ||||||||||||||||||
intact | EBI-849681 (q5z8l1-q65xv7-2) | ||||||||||||||||||
Experiments: | 27 | ||||||||||||||||||
Participant #43 |
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Participant #44 |
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Interaction Type: |
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kd | 1.0 | ||||||||||||||||||
Interaction #45 | |||||||||||||||||||
Name: | q6h7j5-q9avl8-1 :Pulldown analysis reveals interaction between the Q6H7J5 protein and Q9AVl8 protein | ||||||||||||||||||
intact | EBI-849612 (q6h7j5-q9avl8-1) | ||||||||||||||||||
Experiments: | 46 | ||||||||||||||||||
Participant #47 |
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Participant #48 |
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Interaction Type: |
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comment | A weak interaction between OsRAP32-2 and OsRAP70c was detected. | ||||||||||||||||||
kd | 1.0 | ||||||||||||||||||
Interaction #50 | |||||||||||||||||||
Name: | q5z8l1-q65xv7-1 :Pulldown analysis reveals interaction between the q5z8l1 protein and Q65XV7 protein | ||||||||||||||||||
intact | EBI-849618 (q5z8l1-q65xv7-1) | ||||||||||||||||||
Experiments: | 46 | ||||||||||||||||||
Participant #51 |
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Participant #53 |
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Interaction Type: |
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kd | 1.0 | ||||||||||||||||||
Interaction #54 | |||||||||||||||||||
Name: | q9avl8-q6h7j5 :Pulldown analysis reveals interaction between the Q9AVl8 protein and Q6H7J5 protein | ||||||||||||||||||
intact | EBI-849625 (q9avl8-q6h7j5) | ||||||||||||||||||
Experiments: | 46 | ||||||||||||||||||
Participant #55 |
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Participant #56 |
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Interaction Type: |
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kd | 1.0 | ||||||||||||||||||
Interaction #58 | |||||||||||||||||||
Name: | q9avm2-q7y069-1 :Pulldown analysis reveals interaction between the OsRPA32 protein and Q7Y069 protein | ||||||||||||||||||
intact | EBI-849639 (q9avm2-q7y069-1) | ||||||||||||||||||
Experiments: | 46 | ||||||||||||||||||
Participant #59 |
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Participant #60 |
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Interaction Type: |
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comment | A weak interaction between OsRAP32-1 and OsRAP70c was detected. | ||||||||||||||||||
kd | 1.0 | ||||||||||||||||||
Interaction #62 | |||||||||||||||||||
Name: | q65xv7-q5z8l1 :Pulldown analysis reveals interaction between the Q65XV7 protein and q5z8l1 protein | ||||||||||||||||||
intact | EBI-849646 (q65xv7-q5z8l1) | ||||||||||||||||||
Experiments: | 46 | ||||||||||||||||||
Participant #63 |
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Participant #64 |
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Interaction Type: |
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kd | 1.0 | ||||||||||||||||||
Interaction #66 | |||||||||||||||||||
Name: | q7y069-q9avm2 :Pulldown analysis reveals interaction between the Q7Y069 protein and OsRPA32 protein | ||||||||||||||||||
intact | EBI-849654 (q7y069-q9avm2) | ||||||||||||||||||
Experiments: | 46 | ||||||||||||||||||
Participant #67 |
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Participant #69 |
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Interaction Type: |
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comment | A weak interaction between OsRAP70b and OsRAP32-2 was detected. | ||||||||||||||||||
kd | 1.0 |